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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_7087856_7088633_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7087856 - 7088633
Intron Length:
778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATAAA
5'SS Class:
major
3'SS Sequence:
ACTTTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TGTTCCTCACAC
Flanking Amino Acid:
IKCKEEIYYAEEGSSTCIER
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
76.7
33.8
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
83.2
0.75
0.7
81.5
29.7
Minor 5ss
33.3
-1.9
3
41.9
44.8
Minor BPS
53.3
0.08
2
69.08
41.9

Associated Gene:

Gene:
KIAA1324L
Ensembl Gene ID:
ENSAPLG00000009322
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036801
7015411 - 7114789
99379
ENSAPLT00000009758
7080301 - 7113789
33489