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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70881554_70882236_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70881554 - 70882236
Intron Length:
683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATATTTG
5'SS Class:
major
3'SS Sequence:
TATTTTTCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTGTGCTTATTT
Flanking Amino Acid:
AAEKARNEELANEIKQNDKI
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1
66.5
39.5
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
84.7
0.78
0.7
78.2
36
Minor 5ss
49.4
-0
2.5
63.2
43.8
Minor BPS
58.9
0.36
2
79.35
43.5

Associated Gene:

Gene:
RIBC2
Ensembl Gene ID:
ENSAPLG00000009727
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010126
70871352 - 70885952
14601