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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70882319_70885442_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70882319 - 70885442
Intron Length:
3124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGGTG
5'SS Class:
major
3'SS Sequence:
TTCATTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTTCTTCATT
Flanking Amino Acid:
IFNARLRTIGVDKDALDAQV
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
63.9
42.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
76
0.59
0.9
73.3
35.8
Minor 5ss
26.9
-2.6
3.5
29
43.5
Minor BPS
73.4
0.82
1.7
91.07
32.9

Associated Gene:

Gene:
RIBC2
Ensembl Gene ID:
ENSAPLG00000009727
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010126
70871352 - 70885952
14601