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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_7088723_7091916_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7088723 - 7091916
Intron Length:
3194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACGTCAT
U12 Branch Point Sequence:
GTCATGTGAGCT
Flanking Amino Acid:
IHTPCDKEGKTQIMYKWIEP
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
63.4
0.33
1.2
65.3
41.5
Major PPT
87.3
0.84
0.7
84.7
23
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
40.8
-0.6
2.2
57.87
44.7

Associated Gene:

Gene:
KIAA1324L
Ensembl Gene ID:
ENSAPLG00000009322
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029989
7065583 - 7113789
48207
ENSAPLT00000009758
7080301 - 7113789
33489
ENSAPLT00000036801
7015411 - 7114789
99379