About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70887775_70888341_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70887775 - 70888341
Intron Length:
567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACGTAGT
5'SS Class:
major
3'SS Sequence:
TTTCTTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTACAGTGATT
Flanking Amino Acid:
EEKTFSRVIRDSCSEFIFND
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.7
41.5
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
86.6
0.82
0.6
85.9
21.2
Minor 5ss
36.5
-1.5
3
48.4
42.4
Minor BPS
48.5
-0
2.3
77
39.7

Associated Gene:

Gene:
SMC1B
Ensembl Gene ID:
ENSAPLG00000008824
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044324
70885873 - 70920473
34601
ENSAPLT00000022161
70885873 - 70920473
34601
ENSAPLT00000009237
70885873 - 70920473
34601