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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70890432_70890801_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70890432 - 70890801
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAG
U12 Branch Point Sequence:
GTTTGTTTGAGG
Flanking Amino Acid:
RDQQRLEGEMKTLQVSLVQH
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
54.7
0.12
1.7
57.1
49.4
Major PPT
83.6
0.76
0.7
82.3
29.8
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
48
-0.3
2.1
58.64
43.7

Associated Gene:

Gene:
SMC1B
Ensembl Gene ID:
ENSAPLG00000008824
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044324
70885873 - 70920473
34601
ENSAPLT00000022161
70885873 - 70920473
34601
ENSAPLT00000009237
70885873 - 70920473
34601