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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70891061_70892263_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70891061 - 70892263
Intron Length:
1203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATTGG
5'SS Class:
strong_major
3'SS Sequence:
GTTATTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTTTGTTATTT
Flanking Amino Acid:
AVDIELRESQLERYKELKEI
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
68.2
39.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
80.8
0.69
0.9
72.9
42
Minor 5ss
33.5
-1.9
2.9
40.6
45.6
Minor BPS
56.6
0.28
2.2
82.89
39.2

Associated Gene:

Gene:
SMC1B
Ensembl Gene ID:
ENSAPLG00000008824
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044324
70885873 - 70920473
34601
ENSAPLT00000022161
70885873 - 70920473
34601
ENSAPLT00000009237
70885873 - 70920473
34601