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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70901016_70902023_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70901016 - 70902023
Intron Length:
1008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TATTTACTAATT
Flanking Amino Acid:
IAFDGPVRLKTVALDGTLFL
Intron Amino Acid Position:
614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.3
36.2
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
90.7
0.92
0.7
85.8
27.5
Minor 5ss
36.9
-1.5
3.1
49.9
40.3
Minor BPS
56.2
0.27
1.9
78.94
36.9

Associated Gene:

Gene:
SMC1B
Ensembl Gene ID:
ENSAPLG00000008824
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022161
70885873 - 70920473
34601
ENSAPLT00000009237
70885873 - 70920473
34601