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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70909180_70910634_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70909180 - 70910634
Intron Length:
1455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTAC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTGATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTGGTAAAA
Flanking Amino Acid:
DELETTGLFKDEEKHLKRVN
Intron Amino Acid Position:
831

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
71.9
34
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
78.6
0.64
1
73.9
40.4
Minor 5ss
37.1
-1.5
3.3
49.8
46.8
Minor BPS
47.2
-0.2
2.6
71.75
40.6

Associated Gene:

Gene:
SMC1B
Ensembl Gene ID:
ENSAPLG00000008824
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044324
70885873 - 70920473
34601
ENSAPLT00000022161
70885873 - 70920473
34601
ENSAPLT00000009237
70885873 - 70920473
34601