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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70911734_70913167_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70911734 - 70913167
Intron Length:
1434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTAAA
5'SS Class:
major
3'SS Sequence:
ACTGTATTTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATTTCTGAACT
Flanking Amino Acid:
GSLDDISEIELGTEMEGTQT
Intron Amino Acid Position:
931

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
76.2
34.5
Major BPS
100
1.24
0.5
100
0
Major PPT
72.7
0.51
0.9
65.8
39.5
Minor 5ss
34
-1.8
2.9
42.5
44.3
Minor BPS
77.3
0.94
1.3
90.1
33.2

Associated Gene:

Gene:
SMC1B
Ensembl Gene ID:
ENSAPLG00000008824
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022161
70885873 - 70920473
34601
ENSAPLT00000009237
70885873 - 70920473
34601
ENSAPLT00000044324
70885873 - 70920473
34601