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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70913264_70914148_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70913264 - 70914148
Intron Length:
885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTTGTTTATTT
Flanking Amino Acid:
DYSSLASDLKDLESDEEREA
Intron Amino Acid Position:
963

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
74.3
37
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.3
0.82
0.7
85.7
28.8
Minor 5ss
46.6
-0.4
2.8
66.3
44.7
Minor BPS
54.5
0.22
2
76.04
41.4

Associated Gene:

Gene:
SMC1B
Ensembl Gene ID:
ENSAPLG00000008824
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044324
70885873 - 70920473
34601
ENSAPLT00000022161
70885873 - 70920473
34601
ENSAPLT00000009237
70885873 - 70920473
34601