Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70914306_70915089_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

70914306 - 70915089

Intron Length:

784

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAACACTG

5'SS Class:

major

3'SS Sequence:

TTTTTTTTAATAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTTT

U12 Branch Point Sequence:

TTTTTTTTAATA

Flanking Amino Acid:

ARDKFQESMNAFETSRKEAR

Intron Amino Acid Position:

1015

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.4

0.43

1.2

59.1

45.6

Major BPS

38.1

-0.7

4.3

71.7

44.6

Major PPT

86.6

0.82

0.7

85.3

27.9

Minor 5ss

41.3

-1

3.2

53.9

44.3

Minor BPS

82.2

1.01

0.9

86.33

25.3

Associated Gene:

Gene:

SMC1B

Ensembl Gene ID:

ENSAPLG00000008824

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044324

70885873 - 70920473

34601

ENSAPLT00000022161

70885873 - 70920473

34601

ENSAPLT00000009237

70885873 - 70920473

34601