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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70915245_70916572_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70915245 - 70916572
Intron Length:
1328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TATACATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATGTCATTAATA
Flanking Amino Acid:
KKLCRNSSAQAFLSPENPEE
Intron Amino Acid Position:
1067

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
75.7
35.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.5
0.6
0.9
66.6
43.7
Minor 5ss
36.5
-1.5
2.9
49
47.2
Minor BPS
68.8
0.59
1.5
75.05
36.4

Associated Gene:

Gene:
SMC1B
Ensembl Gene ID:
ENSAPLG00000008824
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044324
70885873 - 70920473
34601
ENSAPLT00000022161
70885873 - 70920473
34601
ENSAPLT00000009237
70885873 - 70920473
34601