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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70916725_70916948_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70916725 - 70916948
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAA
U12 Branch Point Sequence:
TTTTCTTCCACA
Flanking Amino Acid:
AALALIFAIHSFRPAPFFIL
Intron Amino Acid Position:
1117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
63.9
0.35
1
63.9
30.3
Major PPT
88.2
0.86
0.6
84.1
24.1
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
61.7
0.36
2
79.34
37.2

Associated Gene:

Gene:
SMC1B
Ensembl Gene ID:
ENSAPLG00000008824
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022161
70885873 - 70920473
34601
ENSAPLT00000009237
70885873 - 70920473
34601
ENSAPLT00000044324
70885873 - 70920473
34601