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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70920130_70920389_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70920130 - 70920389
Intron Length:
260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATGTTTTGAATT
Flanking Amino Acid:
ADALIGVCPEHDNGMFSQVL
Intron Amino Acid Position:
1178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
87
27.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
89.5
0.89
0.6
88
22
Minor 5ss
38.8
-1.3
3.2
57.6
46.6
Minor BPS
61.8
0.45
1.4
74.34
37.1

Associated Gene:

Gene:
SMC1B
Ensembl Gene ID:
ENSAPLG00000008824
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044324
70885873 - 70920473
34601
ENSAPLT00000022161
70885873 - 70920473
34601
ENSAPLT00000009237
70885873 - 70920473
34601