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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_7092098_7092803_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7092098 - 7092803
Intron Length:
706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTTCCTACTC
Flanking Amino Acid:
PQGTFSDGTQECKACPAGTE
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
73.3
36.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.2
0.68
0.8
74.2
29.3
Minor 5ss
34.6
-1.8
3.5
42.5
44.6
Minor BPS
52.1
0.05
1.9
68.79
37

Associated Gene:

Gene:
KIAA1324L
Ensembl Gene ID:
ENSAPLG00000009322
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029989
7065583 - 7113789
48207
ENSAPLT00000009758
7080301 - 7113789
33489
ENSAPLT00000036801
7015411 - 7114789
99379