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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70930069_70930627_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70930069 - 70930627
Intron Length:
559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
AATGTTTTATTT
Flanking Amino Acid:
ESLDLKDKDKVLQWARGHIN
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
77.2
37.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
86
0.81
0.7
85.8
28.6
Minor 5ss
44
-0.7
3.1
65.1
46.1
Minor BPS
50.4
0.09
1.6
66.33
39.3

Associated Gene:

Gene:
FAM118A
Ensembl Gene ID:
ENSAPLG00000008680
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028838
70925090 - 70936434
11345
ENSAPLT00000009168
70925090 - 70936434
11345
ENSAPLT00000009021
70925090 - 70935830
10741