About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70930850_70932186_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70930850 - 70932186
Intron Length:
1337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
TTTCCTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTTTTTTCCT
Flanking Amino Acid:
AHDLIRKMSPRTGDTKPNFF
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
75.4
34.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
90.2
0.9
0.6
88.8
20.5
Minor 5ss
35.4
-1.7
3.5
54.7
43.6
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
FAM118A
Ensembl Gene ID:
ENSAPLG00000008680
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028838
70925090 - 70936434
11345
ENSAPLT00000009168
70925090 - 70936434
11345
ENSAPLT00000009021
70925090 - 70935830
10741