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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70932440_70933780_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70932440 - 70933780
Intron Length:
1341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTTGAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
AGAAAATGATCT
Flanking Amino Acid:
RSTIRSEQKSRKFLKSLITK
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1.1
81.8
38.5
Major BPS
68
0.45
1
57.8
39
Major PPT
71
0.47
1.7
84.4
30.6
Minor 5ss
43
-0.8
2.7
60.7
43.6
Minor BPS
39.1
-0.7
1.9
52.97
40.5

Associated Gene:

Gene:
FAM118A
Ensembl Gene ID:
ENSAPLG00000008680
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028838
70925090 - 70936434
11345
ENSAPLT00000009168
70925090 - 70936434
11345
ENSAPLT00000009021
70925090 - 70935830
10741