Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_70960788_70961246_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

70960788 - 70961246

Intron Length:

459

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTCTG

5'SS Class:

strong_major

3'SS Sequence:

CATGATTTTCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

CTTTCCATGATT

Flanking Amino Acid:

LWSDPIKTRRAKLPMKIDTW

Intron Amino Acid Position:

196

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.8

1.06

0.8

81.8

38.5

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

71.3

0.48

0.9

43.8

Minor 5ss

37.8

-1.4

49.5

46.7

Minor BPS

67.7

0.64

1.6

84.01

37.1

Associated Gene:

Gene:

UPK3A

Ensembl Gene ID:

ENSAPLG00000008649

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040900

70958764 - 70965725

6962

ENSAPLT00000008990

70959738 - 70967281

7544