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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_7097930_7098164_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7097930 - 7098164
Intron Length:
235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TGGCTCTCATTT
Flanking Amino Acid:
AFQRINEGQDSRQFINDMAK
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
77.7
0.62
0.9
73.8
35.4
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
46.7
-0.1
1.8
61.99
42.3

Associated Gene:

Gene:
KIAA1324L
Ensembl Gene ID:
ENSAPLG00000009322
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036801
7015411 - 7114789
99379
ENSAPLT00000029989
7065583 - 7113789
48207
ENSAPLT00000009758
7080301 - 7113789
33489