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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_7105951_7106998_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7105951 - 7106998
Intron Length:
1048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTAAA
5'SS Class:
major
3'SS Sequence:
TGTTTCATATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TGTTTCATATTA
Flanking Amino Acid:
SKVPDVHFFYKSSTVTTSCE
Intron Amino Acid Position:
736

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
77
33.6
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
72.6
0.51
0.9
72.3
37.7
Minor 5ss
35.4
-1.7
3
41.5
39.4
Minor BPS
52.5
0.07
1.8
68.6
37.9

Associated Gene:

Gene:
KIAA1324L
Ensembl Gene ID:
ENSAPLG00000009322
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029989
7065583 - 7113789
48207
ENSAPLT00000009758
7080301 - 7113789
33489
ENSAPLT00000036801
7015411 - 7114789
99379