About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_71061741_71084176_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71061741 - 71084176
Intron Length:
22436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GATATTTTCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TATTTTTCAAGA
Flanking Amino Acid:
VSGDSTEGKKQVEVEVYRRD
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
72.1
0.5
0.9
69.8
41
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
54.5
0.14
1.8
68.03
38.6

Associated Gene:

Gene:
KIAA0930
Ensembl Gene ID:
ENSAPLG00000008316
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027756
71061592 - 71098795
37204
ENSAPLT00000025173
71027890 - 71098646
70757
ENSAPLT00000017810
71027890 - 71098795
70906
ENSAPLT00000008661
71059472 - 71098646
39175
ENSAPLT00000040571
71060639 - 71098795
38157