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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_7107101_7108498_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7107101 - 7108498
Intron Length:
1398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTAAG
5'SS Class:
major
3'SS Sequence:
TCTCTCCTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TGTTTCATAAGC
Flanking Amino Acid:
KPDQGELSVPSSCPAGTCDG
Intron Amino Acid Position:
770

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
72.5
38.4
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
76.7
0.6
0.7
69.5
31.2
Minor 5ss
41.2
-1
2.5
50.7
45.8
Minor BPS
57.1
0.2
1.9
71.69
39.3

Associated Gene:

Gene:
KIAA1324L
Ensembl Gene ID:
ENSAPLG00000009322
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036801
7015411 - 7114789
99379
ENSAPLT00000029989
7065583 - 7113789
48207
ENSAPLT00000009758
7080301 - 7113789
33489