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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_71084285_71085603_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71084285 - 71085603
Intron Length:
1319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGTG
5'SS Class:
major
3'SS Sequence:
TGTGCTGTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
AAATCTTCATTT
Flanking Amino Acid:
SVYLNLILQKLDYVVTCAVC
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
69.9
41.1
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
72.6
0.51
1
69.7
41.5
Minor 5ss
39.6
-1.2
3.5
55.7
48.5
Minor BPS
48.9
-0
1.7
64.76
39.9

Associated Gene:

Gene:
KIAA0930
Ensembl Gene ID:
ENSAPLG00000008316
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040571
71060639 - 71098795
38157
ENSAPLT00000027756
71061592 - 71098795
37204
ENSAPLT00000017810
71027890 - 71098795
70906
ENSAPLT00000008661
71059472 - 71098646
39175