About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_71088253_71089354_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71088253 - 71089354
Intron Length:
1102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGTGC
5'SS Class:
major
3'SS Sequence:
TTCCTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTTCATATTG
Flanking Amino Acid:
EALKKVYDNRFSVQFSVQLC
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
64.8
42.3
Major BPS
100
1.24
0.5
100
0
Major PPT
86.4
0.82
0.7
80.4
31.6
Minor 5ss
36.6
-1.5
3.3
41.6
45.3
Minor BPS
49.2
-0.1
1.9
60.57
41.6

Associated Gene:

Gene:
KIAA0930
Ensembl Gene ID:
ENSAPLG00000008316
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027756
71061592 - 71098795
37204