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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_71088253_71089967_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71088253 - 71089967
Intron Length:
1715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGTGC
5'SS Class:
major
3'SS Sequence:
TGGTGCATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATGTATTT
Flanking Amino Acid:
EALKKVYDNRVSVAAKMAQK
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
64.8
42.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
66.4
0.37
1
59.5
41.6
Minor 5ss
36.6
-1.5
3.3
41.6
45.3
Minor BPS
47.7
-0
2.3
76.23
41.2

Associated Gene:

Gene:
KIAA0930
Ensembl Gene ID:
ENSAPLG00000008316
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040571
71060639 - 71098795
38157
ENSAPLT00000025173
71027890 - 71098646
70757
ENSAPLT00000017810
71027890 - 71098795
70906
ENSAPLT00000008661
71059472 - 71098646
39175