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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_71090163_71092302_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71090163 - 71092302
Intron Length:
2140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
ATTTCCTTTATT
Flanking Amino Acid:
SNPDSPVHERVTSFSTPPTP
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
75.5
40.6
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
94.5
1
0.5
93.1
16
Minor 5ss
38.7
-1.3
2.8
48
41.7
Minor BPS
76.9
0.93
1.5
90.44
33

Associated Gene:

Gene:
KIAA0930
Ensembl Gene ID:
ENSAPLG00000008316
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008661
71059472 - 71098646
39175
ENSAPLT00000040571
71060639 - 71098795
38157
ENSAPLT00000027756
71061592 - 71098795
37204
ENSAPLT00000025173
71027890 - 71098646
70757
ENSAPLT00000017810
71027890 - 71098795
70906