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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_71092466_71094500_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
71092466 - 71094500
Intron Length:
2035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTACCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCATTTTAAACA
Flanking Amino Acid:
EEFFRDDDGGDLHSATNLRS
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
26.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.7
0.76
0.8
77
31.6
Minor 5ss
24.3
-3
3.1
28.7
43.6
Minor BPS
58.9
0.28
1.6
66.93
40.2

Associated Gene:

Gene:
KIAA0930
Ensembl Gene ID:
ENSAPLG00000008316
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025173
71027890 - 71098646
70757
ENSAPLT00000017810
71027890 - 71098795
70906
ENSAPLT00000008661
71059472 - 71098646
39175
ENSAPLT00000040571
71060639 - 71098795
38157
ENSAPLT00000027756
71061592 - 71098795
37204