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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_7110698_7113729_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7110698 - 7113729
Intron Length:
3032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CTTTTTTCCATT
Flanking Amino Acid:
LGKLKSLATKEKDDHFESVQ
Intron Amino Acid Position:
928

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.9
28.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
87.3
0.84
0.7
82.1
28.1
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
48.6
-0
1.9
70.72
41.5

Associated Gene:

Gene:
KIAA1324L
Ensembl Gene ID:
ENSAPLG00000009322
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036801
7015411 - 7114789
99379
ENSAPLT00000029989
7065583 - 7113789
48207
ENSAPLT00000009758
7080301 - 7113789
33489