Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_71116841_71117302_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

71116841 - 71117302

Intron Length:

462

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTTTAATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTAAA

U12 Branch Point Sequence:

TTTCTTTTAATA

Flanking Amino Acid:

KTTSETQSVFGSTISNGPAT

Intron Amino Acid Position:

117

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.8

89.6

24.1

Major BPS

0.57

73.6

28.6

Major PPT

0.74

0.8

81.2

29.3

Minor 5ss

46.3

-0.4

2.8

64.1

41.5

Minor BPS

74.7

0.77

1.1

29.3

Associated Gene:

Gene:

NUP50

Ensembl Gene ID:

ENSAPLG00000007979

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046842

71110606 - 71120881

10276

ENSAPLT00000008307

71111254 - 71120881

9628