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Intron Name: Anas_platyrhynchos_platyrhynchos_1_71117499_71119557_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

71117499 - 71119557

Intron Length:

2059

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATGTAG

5'SS Class:

major

3'SS Sequence:

CTTTTCTCCCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTAAC

U12 Branch Point Sequence:

GTGCATGTAACT

Flanking Amino Acid:

KAKRRNVGSEPEGGGAFKGF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

68.5

38.9

Major BPS

65.7

0.39

1.2

67.4

36.7

Major PPT

84.2

0.77

0.7

77.1

31.6

Minor 5ss

36.1

-1.6

3.2

46.5

48.8

Minor BPS

-0.1

2.1

67.01

43.5

Associated Gene:

Gene:

NUP50

Ensembl Gene ID:

ENSAPLG00000007979

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046842

71110606 - 71120881

10276

ENSAPLT00000008307

71111254 - 71120881

9628