Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_71119642_71120802_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

71119642 - 71120802

Intron Length:

1161

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAACGAT

5'SS Class:

strong_major

3'SS Sequence:

CTTCTTCTCAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

GATTTCATAACT

Flanking Amino Acid:

NWDQEDEAEEVGTFSVASEE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

74.7

35.6

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

72.9

0.52

74.1

28.4

Minor 5ss

37.4

-1.4

3.5

49.2

Minor BPS

68.5

0.66

1.6

83.02

37.3

Associated Gene:

Gene:

NUP50

Ensembl Gene ID:

ENSAPLG00000007979

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046842

71110606 - 71120881

10276

ENSAPLT00000008307

71111254 - 71120881

9628