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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_71252654_71253592_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71252654 - 71253592
Intron Length:
939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
GCCGTTTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTGCCTTTAATA
Flanking Amino Acid:
ALKVEIQCHQNGDLKKQIHE
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
78.1
0.63
0.9
71.9
38
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
73.7
0.74
1.1
76.46
35

Associated Gene:

Gene:
PHF21B
Ensembl Gene ID:
ENSAPLG00000007786
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008078
71252600 - 71414094
161495