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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_71253659_71385097_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71253659 - 71385097
Intron Length:
131439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTAAACC
Flanking Amino Acid:
ARIAALNEKQTLGTITAVPI
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
75.8
33.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.5
0.71
0.8
78
29.4
Minor 5ss
34.3
-1.8
3.2
43.2
38.3
Minor BPS
63.7
0.41
1.6
73.03
38.7

Associated Gene:

Gene:
PHF21B
Ensembl Gene ID:
ENSAPLG00000007786
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008078
71252600 - 71414094
161495