Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_71385191_71401139_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

71385191 - 71401139

Intron Length:

15949

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAAAAT

5'SS Class:

major

3'SS Sequence:

ACCCTTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTAAC

U12 Branch Point Sequence:

TAACATCTAACC

Flanking Amino Acid:

AGQGPAVLPQVRPKTLIPDS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

74.2

Major BPS

75.8

0.64

0.9

75.6

25.3

Major PPT

81.5

0.71

0.8

31.8

Minor 5ss

33.4

-1.9

3.3

48.6

47.1

Minor BPS

48.1

-0.1

1.8

60.25

37.9

Associated Gene:

Gene:

PHF21B

Ensembl Gene ID:

ENSAPLG00000007786

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008078

71252600 - 71414094

161495