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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_71403793_71409131_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71403793 - 71409131
Intron Length:
5339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
GTGTGTTTATTT
Flanking Amino Acid:
TKKKKEENPEKIAFMVALGL
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
85.8
25.2
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
83.7
0.76
0.6
80.4
25
Minor 5ss
40.8
-1
3
58.4
46.2
Minor BPS
49.1
0.01
2
67.82
43.9

Associated Gene:

Gene:
PHF21B
Ensembl Gene ID:
ENSAPLG00000007786
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008078
71252600 - 71414094
161495