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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_71409184_71413957_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
71409184 - 71413957
Intron Length:
4774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TCCATGGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
AAACATATAATT
Flanking Amino Acid:
LGLVTTEHLEEIQSKRQERK
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
72.5
39.9
Major BPS
79
0.72
1
78.4
31.2
Major PPT
71.3
0.48
1
63.6
41.7
Minor 5ss
37.3
-1.4
3
47.6
47.9
Minor BPS
46.3
-0.2
1.7
60.38
36.4

Associated Gene:

Gene:
PHF21B
Ensembl Gene ID:
ENSAPLG00000007786
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008078
71252600 - 71414094
161495