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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_71436370_71443876_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71436370 - 71443876
Intron Length:
7507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TATATCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATGTTTATAT
Flanking Amino Acid:
LKYLICFLHMVSRESIYNRM
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
84.9
26.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.4
0.77
0.8
81.4
35.8
Minor 5ss
34
-1.8
2.8
39.2
40.5
Minor BPS
49.7
0.06
2.1
73.8
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007670
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037931
71432603 - 71505518
72916
ENSAPLT00000013812
71432603 - 71505518
72916
ENSAPLT00000007957
71432603 - 71504238
71636