About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_71443981_71446416_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
71443981 - 71446416
Intron Length:
2436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTCACAAGC
5'SS Class:
weak_major
3'SS Sequence:
TTTGATATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTCGAGTTAAAT
Flanking Amino Acid:
DREPVGLPVTSVESSLRVTR
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.2
0.05
1.4
54.5
43.3
Major BPS
84
0.85
0.9
75
39.9
Major PPT
80.6
0.69
0.9
74.3
39.8
Minor 5ss
36.5
-1.5
2.9
44.7
36.8
Minor BPS
46.7
-0.1
2.4
69.83
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007670
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037931
71432603 - 71505518
72916