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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_71446446_71448478_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
71446446 - 71448478
Intron Length:
2033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTATTAACT
5'SS Class:
weak_major
3'SS Sequence:
CTTGTCAATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
CTCTTGTCAATT
Flanking Amino Acid:
CYDHILGITSDREPVGLPVT
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.9
0.12
1.1
57.3
39.7
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
69.9
0.45
0.9
67.6
38
Minor 5ss
43.5
-0.7
2.8
55.8
42.2
Minor BPS
47.4
-0.1
2.2
66.82
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007670
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037931
71432603 - 71505518
72916