About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_71469475_71470619_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
71469475 - 71470619
Intron Length:
1145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
TTGATTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
GATTTCTTGATT
Flanking Amino Acid:
DQLNIPQEVIQHDENLWRKQ
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.1
64.6
40.3
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
85.5
0.8
0.8
80.7
36.7
Minor 5ss
35.2
-1.7
3.3
49.2
41.2
Minor BPS
72
0.77
1.1
80.14
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007670
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037931
71432603 - 71505518
72916
ENSAPLT00000013812
71432603 - 71505518
72916
ENSAPLT00000007957
71432603 - 71504238
71636