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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_71489166_71491848_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
71489166 - 71491848
Intron Length:
2683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TCTTTCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TGTCTCAAAACT
Flanking Amino Acid:
SHQLNHTRLLEYLKYTLDHY
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
76
34.8
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
88.9
0.87
0.6
88
21.8
Minor 5ss
46
-0.4
2.7
58.2
40.5
Minor BPS
50.7
0.1
1.9
74.99
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007670
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037931
71432603 - 71505518
72916
ENSAPLT00000013812
71432603 - 71505518
72916
ENSAPLT00000007957
71432603 - 71504238
71636