Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_71491937_71503489_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

71491937 - 71503489

Intron Length:

11553

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTATGTTTG

5'SS Class:

major

3'SS Sequence:

TTTTGTTCACTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTAAC

U12 Branch Point Sequence:

TTATCTTTACTA

Flanking Amino Acid:

VARHGIIQLAGDDNFGRKVI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

71.4

41.2

Major BPS

76.8

0.67

0.9

75.9

Major PPT

76.6

0.6

0.9

71.3

39.5

Minor 5ss

49.5

-0

2.4

58.1

46.5

Minor BPS

67.4

0.54

1.5

75.68

36.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007670

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007957

71432603 - 71504238

71636

ENSAPLT00000037931

71432603 - 71505518

72916

ENSAPLT00000013812

71432603 - 71505518

72916