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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_71610771_71611430_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71610771 - 71611430
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTATTTTTATTT
Flanking Amino Acid:
LGSFFTEYLQNQLLTKGMVI
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.7
44.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
94.3
1
0.6
93.1
23.6
Minor 5ss
41.6
-0.9
3.2
56.4
48
Minor BPS
57.7
0.32
1.6
71.47
40.5

Associated Gene:

Gene:
PRR5
Ensembl Gene ID:
ENSAPLG00000013310
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013906
71578605 - 71629821
51217
ENSAPLT00000025318
71578605 - 71629804
51200