Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_71611480_71619326_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

71611480 - 71619326

Intron Length:

7847

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAGAT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTTGATACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

CTTTTCTTATTC

Flanking Amino Acid:

HELYNLNEGVRQLLKTELGS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.3

0.8

84.2

26.4

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

81.1

0.7

0.9

76.3

36.9

Minor 5ss

32.1

-2

3.5

46.6

48.7

Minor BPS

65.7

0.47

1.6

73.26

38.6

Associated Gene:

Gene:

PRR5

Ensembl Gene ID:

ENSAPLG00000013310

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025318

71578605 - 71629804

51200

ENSAPLT00000013906

71578605 - 71629821

51217