Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_7165985_7221854_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

7165985 - 7221854

Intron Length:

55870

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAAGAA

5'SS Class:

strong_major

3'SS Sequence:

GTCTCTTCTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

CCTTTTCTAATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

0.9

73.7

30.1

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

79.1

0.65

0.8

77.4

31.4

Minor 5ss

29.1

-2.4

3.4

37.8

Minor BPS

0.27

1.7

71.16

Associated Gene:

Gene:

GRM3

Ensembl Gene ID:

ENSAPLG00000010134

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010562

7121792 - 7221910

100119