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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72227144_72236089_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72227144 - 72236089
Intron Length:
8946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACTTGT
5'SS Class:
major
3'SS Sequence:
CTCTCATCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTATGTTGATCT
Flanking Amino Acid:
FLIPASTTEMLHNVNLALDL
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.2
71.5
41.1
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
74.8
0.56
0.8
68.5
30.7
Minor 5ss
47.6
-0.2
2.6
64.6
41.8
Minor BPS
48.7
-0
2.1
73.48
43.4

Associated Gene:

Gene:
PARVG
Ensembl Gene ID:
ENSAPLG00000003412
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003489
72224329 - 72247151
22823