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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72237330_72237443_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72237330 - 72237443
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTTAT
U12 Branch Point Sequence:
CTCCCCTTATTT
Flanking Amino Acid:
APDRLDDVKKVFLQFVNQHV
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
85.9
25.1
Major BPS
66.5
0.41
1.1
57.2
40.1
Major PPT
92.8
0.96
0.5
93.3
15.6
Minor 5ss
41.9
-0.9
2.9
58.4
46.2
Minor BPS
60.1
0.4
1.7
72.9
44.5

Associated Gene:

Gene:
PARVG
Ensembl Gene ID:
ENSAPLG00000003412
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003489
72224329 - 72247151
22823