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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72237503_72238969_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72237503 - 72238969
Intron Length:
1467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGATGCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTCCAAATAATA
Flanking Amino Acid:
GSKENLEEQSNDAFDELFSR
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
68.3
0.41
1.1
63.3
42.6
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
45.4
-0.3
2
60.3
39.2

Associated Gene:

Gene:
PARVG
Ensembl Gene ID:
ENSAPLG00000003412
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003489
72224329 - 72247151
22823